Intl. Conf. on Research in Computational Molecular Biology, RECOMB 2016


Title/Authors Title Research Artifacts
[?] A research artifact is any by-product of a research project that is not directly included in the published research paper. In Computer Science research this is often source code and data sets, but it could also be media, documentation, inputs to proof assistants, shell-scripts to run experiments, etc.
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Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data

Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin Collins, Süleyman Cenk Sahinalp

Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data

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The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB)

Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin

The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB)

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Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants

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A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets

Chandler Zuo, Kailei Chen, Sündüz Keles

A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets

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Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution

Constantinos Tsirogiannis, Brody Sandel

Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution

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LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

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New Genome Similarity Measures Based on Conserved Gene Adjacencies

Luis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye

New Genome Similarity Measures Based on Conserved Gene Adjacencies

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On Computing Breakpoint Distances for Genomes with Duplicate Genes

Mingfu Shao, Bernard M. E. Moret

On Computing Breakpoint Distances for Genomes with Duplicate Genes

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Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast

Hao Wang, Joel McManus, Carl Kingsford

Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast

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Safe and Complete Contig Assembly Via Omnitigs

Alexandru I. Tomescu, Paul Medvedev

Safe and Complete Contig Assembly Via Omnitigs

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Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters

David Pellow, Darya Filippova, Carl Kingsford

Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters

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MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows

Ahmed Sobih, Alexandru I. Tomescu, Veli Mäkinen

MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows

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pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression

Simona Cristea, Jack Kuipers, Niko Beerenwinkel

pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression

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Multitask Matrix Completion for Learning Protein Interactions Across Diseases

Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan

Multitask Matrix Completion for Learning Protein Interactions Across Diseases

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Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias

Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad

Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias

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Flexible Modelling of Genetic Effects on Function-Valued Traits

Nicoló Fusi, Jennifer Listgarten

Flexible Modelling of Genetic Effects on Function-Valued Traits

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